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Lab Chips Get Specific

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Hank Hogan, Contributing Editor,

After sometimes seeming like a solution in search of a problem, lab-on-a-chip technology may be finding its footing in application-specific incarnations, not in general-purpose devices. One key to its success is finding the right targets and better photonics.

Helping the next generation

Josh Molho, an engineering program manager at Caliper Life Sciences in Hopkinton, Mass., noted that lab-on-a-chip implementations originally were envisioned as being able to replace a full-size, general-purpose lab. The combination of microfluidics, electronics, photonics and automated processing comprising a lab on a chip promised to shrink an entire benchtop setup into something thumbnail-size and inexpensive, without sacrificing performance.

This automated nucleic acid fractionation instrument is an example of an application-specific lab on a chip. Courtesy of Caliper Life Sciences.

Current technology does not yet match that vision – and it’s unclear when, or if, it ever will. But integrating some functionality is still valuable.

“It doesn’t have to be an entire lab,” Molho said. “If, for instance, you can integrate sample preparation and analysis, that gets you closer to a point-of-care diagnostic.”

He pointed to several recent Caliper products as illustrating this concept of greater integration. These include new high-sensitivity glycan and protein assay lab-on-a-chip implementations.

He also mentioned a use of the technology to improve the work flow of next-generation gene sequencers. These devices are key to reducing the cost of genome sequencing to less than $1000, rather than the millions needed when using first-generation devices.

In this application, lab-on-a-chip technology automates the separation, analysis and purification of samples going into a second-generation sequencer, a process that today is done manually and is therefore costly, slow and prone to variation. Caliper’s solution involves microfluidics and the use of selectively applied voltage to isolate fragments of a desired base-pair size into a collection well.

In (A), a zone plate fabricated in PDMS, a rubbery material used extensively in microfluidic chips, allows parallel optics to interrogate parallel channels. In (B), two microfluidic channels branch into four, then eight. Each of the eight has four zone plates aligned to it. An implementation example can be seen in (C), where drops travel from left to right down 64 branching microfluidic channels, with an array of 8 x 8 zone plates providing the optics. Courtesy of Ken Crozier, Harvard University.

Looking forward, Molho said that application-specific labs on a chip are likely to need more powerful, better-performing, cheaper and smaller photonics. Many of the detection schemes employed in the devices depend upon fluorescence or make use of a variety of imaging techniques. Shrinking the optics, detectors and light sources to a size comparable to the chip-size microfluidics is important, particularly for something intended for handheld use.

There has been progress in this area. There are tales of the original chip readers being too big for an elevator; current implementations fit on a bench. Further miniaturization, however, must happen, Molho said. “You need the whole system to get more compact.”

Photonics builds better chips

An example of how such miniaturization might be accomplished comes from two recent research efforts. The first involves work done at Harvard University in Cambridge, Mass. The second is from a group of companies and universities in Europe.

At Harvard, a group led by associate professor of electrical engineering Kenneth B. Crozier produced a solution to the measurement problem confronting many lab-on-a-chip applications. The issue is that the microfluidics can be done in parallel but that the detection is typically done in serial by, for instance, scanning a focused laser spot across a chip. The result is a processing bottleneck or inferior detection – or both.

The researchers overcame this issue, as reported in the journal Lab on a Chip with lead author Ethan Schonbrun. They used an integrated zone plate array, a thin silicone sheet containing embedded optics that is attached to a microfluidic chip. The zone plate array provides the optics needed to focus excitation light down onto a channel and the means to collect the resulting fluorescence for eventual detection off chip.

The breakthrough lies in the parallel nature of the optics, Crozier said. “One can excite and collect fluorescence from many microfluidic channels simultaneously. It should be possible to scale the device up simply by fabricating larger arrays of zone plates.”

The parallel detection capability could be useful in applications where high throughput is needed. For other applications, this new approach offers the advantage of an imaging system that is lighter and smaller than a traditional microscope-based one.

In demonstrating the concept, the researchers used a 64-channel microfluidic device with 15-μm-wide channels spaced 30 μm apart. The array consisted of 8 x 8 zone plates, each of which achieved a high numerical aperture. The researchers tilted these at an angle to the microfluidic channels. This arrangement of the two-dimensional array to the one-dimensional channels allowed each zone plate to be aligned to a unique channel.

For excitation of the resorufin dye in the demonstration, the researchers used a 532-nm laser. They detected the resulting 575-nm fluorescence with a high-speed CMOS camera sitting behind appropriate filters.

In a proof of concept, the researchers sent droplets down the microfluidic channels. Their system analyzed nearly 200,000 drops per second, about four times faster than is possible with conventional state-of-the-art methods. Crozier said that at least a tenfold increase in throughput is possible through the use of larger arrays of zone plates and by faster operation of the camera. There would have to be some other changes as well, he noted. “To maintain the signal-to-noise ratio, a higher-power laser would be needed.”

The researchers have patented their invention, and their hope is that it will find commercial use, perhaps in something like a field assay.

Carving channels

A second example of how photonics-related innovations can play a role in lab-on-a-chip development comes from a European research project that ended late last year. Dubbed HIBISCUS (hybrid integrated biophotonic sensors created by ultrafast laser systems), the project involved researchers from four companies and two universities who used high-intensity femtosecond laser pulses to micromachine three-dimensional features in glass microchips.

The technique created waveguides in the glass, enabling fluorescence or other optical signals to be funneled where needed. Thus, the light from a reaction site could be directed to a detector sitting off chip. The same technique could be used to carve out the microfluidic channels themselves, opening up the possibility of building chips with fewer manufacturing steps.

LioniX BV and Zebra Bioscience BV, both of Enschede, the Netherlands, participated in the project and reportedly are developing products based on the technique or are actively investigating its use in biochip construction. One application could be mass production of disposable diagnostic devices.

At-home testing

A final lab-on-a-chip application-specific solution to a problem comes from another HIBISCUS participant, the University of Twente in Enschede. Twente graduate student Loes I. Segerink was lead author of a recent Lab on a Chip paper that described what could eventually be an at-home fertility test. The device would do this by counting sperm, but an extension of the idea could have other applications.

This schematic shows a lab-on-a-chip sperm detector that could be used in a home fertility test. Passing cells change the impedance of a microfluidic channel, and that can be differentiated from a polystyrene ball (cells are red, balls are blue). The variable Z represents impedance, and the Y-axis charts its absolute value. Courtesy of Loes Segerink, University of Twente.

“In our article, I showed that it is possible to count HL-60 cells as well,” Segerink said. She added that similar schemes have been shown by others in the past to be able to detect red blood cells and phytoplankton.

The Twente approach depends upon detecting slight changes in electrical characteristics that arise as a result of cells traveling through a microfluidic channel. The fluid within the channel completes a circuit. The existence of cells changes the channel’s impedance, its resistance to alternating current.

In demonstrating their concept, the researchers built a chip out of two glass wafers, with a microfluidic channel between them. They also constructed platinum electrodes on one side of the channel and used these to make electrical measurements.

Tests showed that the device could count sperm and distinguish between them and 6-μm-diameter polystyrene beads, which are of a similar size. Other studies showed that the device could differentiate between sperm and white blood, or HL-60, cells that measure up to 15 μm. Finally, tests showed that the device could measure sperm concentration, a critical parameter in assessing male fertility.

The chip in the middle, Type B, demonstrated what could form the basis for an at-home male fertility test. Each lab-on-a-chip type consists of an inlet and an outlet, with a microchannel in between. Electrodes located on the tapering part of the channel are used for sperm-cell detection. Courtesy of Loes Segerink, University of Twente.

Asked why the researchers chose to use electrical rather than optical detection, Segerink noted group expertise in that area. She added another reason, however, one that shows that an optical approach is not always the best. Because no fluorescent labeling would be involved with an electrical method, there would be no need for additional handling of the sample before a test could be done.

Less handling is better because of where the device will be used and of who will be using it, Segerink said. “The idea is to use our system eventually at home.”

Apr 2010
An opening or hole through which radiation or matter may pass.
1. A localized fracture at the end of a cleaved optical fiber or on a glass surface. 2. An integrated circuit.
1. A device designed to convert the energy of incident radiation into another form for the determination of the presence of the radiation. The device may function by electrical, photographic or visual means. 2. A device that provides an electric output that is a useful measure of the radiation that is incident on the device.
That branch of science involved in the study and utilization of the motion, emissions and behaviors of currents of electrical energy flowing through gases, vacuums, semiconductors and conductors, not to be confused with electrics, which deals primarily with the conduction of large currents of electricity through metals.
The emission of light or other electromagnetic radiation of longer wavelengths by a substance as a result of the absorption of some other radiation of shorter wavelengths, provided the emission continues only as long as the stimulus producing it is maintained. In other words, fluorescence is the luminescence that persists for less than about 10-8 s after excitation.
An instrument consisting essentially of a tube 160 mm long, with an objective lens at the distant end and an eyepiece at the near end. The objective forms a real aerial image of the object in the focal plane of the eyepiece where it is observed by the eye. The overall magnifying power is equal to the linear magnification of the objective multiplied by the magnifying power of the eyepiece. The eyepiece can be replaced by a film to photograph the primary image, or a positive or negative relay...
The processes in which luminous energy incident on the eye is perceived and evaluated.
zone plate
A plate of glass, usually a photograph, on which there is a central spot surrounded by concentric annular zones, alternately opaque and transparent, the radii of the boundaries between the zones being proportional to the square roots of the natural numbers, 1, 2, 3.... It has the property of forming a real image of a point on the axis, as does a lens, but by a process of diffraction instead of refraction.
Americasapertureassayautomated processingbenchtopBiophotonicsCaliper Life SciencescameraschipcircuitCMOSdetectiondetectorelectrodeelectronicsembedded opticsEthan SchonbrunFeaturesfertility testFiltersfluorescencefluorescent labelinggene sequencegenome sequencingglass waferglycanHank HoganHarvard UniversityHIBISCUSHL-60hybrid integrated biophotonic sensors created by ultrafast laser systemsindustrialJosh MohoKenneth Crozierlab-on-a-chiplight sourcesLioniXLoes SegerinkmicrofluidicsmicroscopeMicroscopyopticspatentphytoplanktonplate arraypoint-of-care diagnosticsprotein assaySensors & DetectorssiliconespermTest & Measurementthe NetherlandsUniversity of TwentevisionWaferswhite bloodwork flowZebra Biosciencezone plateLEDs

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